DreEX0028430 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1791102-1794148:+
Coord C1 exon
chr2:1791102-1791227
Coord A exon
chr2:1791569-1791628
Coord C2 exon
chr2:1793981-1794148
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCACAATTTTTTCTCCTCAGATG
3' ss Score
10.34
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
AGACTCATTGAAACGTCAGGCTTCGGTGAAAATTCAGAAGCCATTAGCCAACAAATCCTGAATCACAACAAGTTCCACAGTTCAATCCAGAGAAGCCAGGAGGTGGACAGAGCCCGCGACGATCTG
Seq A exon
ATGCAGAGCAGGGAAAAGGCTGGACTACATGCTCTGGACCAAGAGTGGGACAGTTTACAG
Seq C2 exon
AAAATGTCCCATGCACGTATGGATCATCTGCGAGACCTACAGAGCATCATCGAGGAGATTTCCAGAGCCATCATGTGGGTCAACGACAGAGAGGAGGAGGAGCTGGTGTTTGACTGGGGCGATAAAAACATTGACAACTACATCCCTCAAAAACAAGAGAGCTACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'4-7,'4-5,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.310 A=0.150 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(41.0=76.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAGAAGCCAGGAGGTG
R:
CAGCTCCTCCTCCTCTCTGTC
Band lengths:
147-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]