RnoEX6053422 @ rn6
Exon Skipping
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27316417-27320320:-
Coord C1 exon
chr17:27320218-27320320
Coord A exon
chr17:27317526-27317674
Coord C2 exon
chr17:27316417-27316585
Length
149 bp
Sequences
Splice sites
3' ss Seq
ATGCAAATTCCTCCTGCTAGGAA
3' ss Score
6.2
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
TCAAACCGGCACCATGTCCAGGCATCAGAACCAGAACACTATCCAAGAACTTCTGCAAAACTGCGCAGACTGTCTGATGCGGGCAGAGCTGATCGCACAGCCG
Seq A exon
GAACTGAAGTTCGGAGAAGGAATCCAGCTGGCGTGGAACAGAGAACTGGATGAGTATTTCACTCAAGCCAATGATCAGATGGAAATCATAGATGGCTTGATCCGGGAGATGAGGCAGATGGGCCAGCCCTGTGATGCGTATCAGAAAAG
Seq C2 exon
ACTGCTTCAGCTCCAGGAACAGATGCGAGCCCTGTACAAGGCCATCAGTGCCCCTCGAGTGCGAAGGGCCAGCTCCAAGGGAGGGTACACTTGTCAGAGTGGCTCCGGGTGGGATGAATTCACCAAACGCCTGACGGGCGAGTGCCTGGGCTGGATGAGGCAGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-'3-7,'3-2,5-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCATACCGAGATTTCCTCA
R:
CTCGATTTTGTCTGACGCTGGA
Band lengths:
202-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]