GgaEX6020305 @ galGal3
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
NA
Coordinates
chr2:65717502-65719575:-
Coord C1 exon
chr2:65719473-65719575
Coord A exon
chr2:65717975-65718123
Coord C2 exon
chr2:65717502-65717676
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTAATTTTAGGAA
3' ss Score
11.68
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
TCAGAATGGGACCTGTACAGTTACCAGACGTCAGAACACCATTCAGGAGCTTCTGCAAAACTGTTCGGATTGCCTGATGAGAGCTGAGCTCATAGTACAACCT
Seq A exon
GAATTGAAATATGGTGATGGTGTCCAGATTAGAGGAAACAGAGATCTGGAAGAATGTTTTGCGCAGGCAAATGACCAAATGGACATCCTGGATGGGCTGATCCGAGAGCTAAGGCAGATGAATCAGCCCTGTGAAATGTATCAGAAAAG
Seq C2 exon
GCTGCTCCAACTTCAAGAGCAAATGCGAGCTCTGTACAAAGCCATTAGTGTTCCCCGTGCCAGGAGGGCCAGCTCCAAAGGTGGTGGTTGCTACTCCTCTCAGAGTGGTTCAGGCTGGGATGAGTACACAAAACGTGTGACAAGTGAATGCTTAAATTGGATGAGGCAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACCTGTACAGTTACCAGA
R:
AGCATTCACTTGTCACACGTT
Band lengths:
249-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]