GgaEX6020305 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64638194-64640267:-
Coord C1 exon
chr2:64640165-64640267
Coord A exon
chr2:64638667-64638815
Coord C2 exon
chr2:64638194-64638368
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTTTTAATTTTAGGAA
3' ss Score
11.68
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
TCAGAATGGGACCTGTACAGTTACCAGACGTCAGAACACCATTCAGGAGCTTCTGCAAAACTGTTCGGATTGCCTGATGAGAGCTGAGCTCATAGTACAACCT
Seq A exon
GAATTGAAATATGGTGATGGTGTCCAGATTAGAGGAAACAGAGATCTGGAAGAATGTTTTGCGCAGGCAAATGACCAAATGGACATCCTGGATGGGCTGATCCGAGAGCTAAGGCAGATGAATCAGCCCTGTGAAATGTATCAGAAAAG
Seq C2 exon
GCTGCTCCAACTTCAAGAGCAAATGCGAGCTCTGTACAAAGCCATTAGTGTTCCCCGTGCCAGGAGGGCCAGCTCCAAAGGTGGTGGTTGCTACTCCTCTCAGAGTGGTTCAGGCTGGGATGAGTACACAAAACGTGTGACAAGTGAATGCTTAAATTGGATGAGGCAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043516=Spectrin=PU(15.9=28.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACCTGTACAGTTACCAGA
R:
AGCATTCACTTGTCACACGTT
Band lengths:
249-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]