DreEX6025012 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1773857-1776091:+
Coord C1 exon
chr2:1773857-1773947
Coord A exon
chr2:1774034-1774155
Coord C2 exon
chr2:1775899-1776091
Length
122 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTTTCTGGACAGATG
3' ss Score
10.29
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
CATGTCTTCCATGGCGGTTCAGAAGCGAGCTCAGATGTTGTACAGTGACTGCATGGGATTCCTGCAGCGAGCGCAGGGCCTCCTGGAGACT
Seq A exon
ATGGGACCTGCTTCTGAGGTGGACAAGAACATGATGGCAGCGCAGGACGCCATGGATCAGCTGCGGAAATGTGCGGTGGACATGAGGAACGCCGGTCTGCCTAATGACATGATCCTCCGCAG
Seq C2 exon
TTTGGAGGACTGTCATAGCTTTTATGCAGACATTCGCAACTCCATCACGGGCACCACCATCAGGAGGACTGGCGGCACCGTCAGCGGCACCATCGGTGGCACCATCAGTGGCACCATTGGTGGCACTGTCGGCGGCTGGGACGATCCCAGCAAGAGCTTTCAGGACGCACTGTCATGGATCAACCAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.195 C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCATGGCGGTTCAGAAG
R:
AGTGCGTCCTGAAAGCTCTTG
Band lengths:
258-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]