MmuEX6057992 @ mm10
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38164764-38168780:+
Coord C1 exon
chr13:38164764-38164866
Coord A exon
chr13:38167516-38167664
Coord C2 exon
chr13:38168606-38168780
Length
149 bp
Sequences
Splice sites
3' ss Seq
ATGCAACTTCTTCCTAATAGGAA
3' ss Score
7.22
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
TCAAACCGGCACCATGTCTAGACATCAGAATCAGAACACCATCCAAGAAATGCTGCAAAATTGCTCAGACTGTCTGATGCGGGCGGAGCTGATCGCGCAGCCG
Seq A exon
GAACTGAAATTCGGAGAAGGGATGCAGCTGGCATGGAACCGAGAGCTGGATGAGTATTTTACACAAGCCAACGATCAGATGGAAATCATAGACGGCTTGATCCGAGAGATGAGGCAGATGGGCCAGCCCTGTGATGCGTATCAGAAAAG
Seq C2 exon
ACTGCTTCAGCTCCAGGAACAAATGCGAGCCCTTTACAAGGCCATCAGCGTCCCTCGGGTCCGAAGAGCCAGCTCCAAGGGAGCCGGAGGGTACACTTGCCAGAGTGGATCCGGCTGGGACGAGTTCACCAAACGCCTCACGGGCGAGTGTCTGGGCTGGATGAGGCAGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'1-8,'1-1,3-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.343 A=0.020 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAACCGGCACCATGTCTAG
R:
GAGGCGTTTGGTGAACTCGTC
Band lengths:
242-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types