RnoEX0029982 @ rn6
Exon Skipping
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27317526-27321095:-
Coord C1 exon
chr17:27320995-27321095
Coord A exon
chr17:27320218-27320320
Coord C2 exon
chr17:27317526-27317674
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGATTTCTTTGTCTCCACAGTCA
3' ss Score
8.4
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
TTCTTCTCCTCATACCGAGATTTCCTCACCTCTTGAAGTGATTGTGGAGAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
TCAAACCGGCACCATGTCCAGGCATCAGAACCAGAACACTATCCAAGAACTTCTGCAAAACTGCGCAGACTGTCTGATGCGGGCAGAGCTGATCGCACAGCCG
Seq C2 exon
GAACTGAAGTTCGGAGAAGGAATCCAGCTGGCGTGGAACAGAGAACTGGATGAGTATTTCACTCAAGCCAATGATCAGATGGAAATCATAGATGGCTTGATCCGGGAGATGAGGCAGATGGGCCAGCCCTGTGATGCGTATCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-'3-2,'3-1,4-2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.343 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCATACCGAGATTTCCTCA
R:
TCTGATACGCATCACAGGGCT
Band lengths:
242-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]