MmuEX6057993 @ mm10
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38151328-38167664:+
Coord C1 exon
chr13:38151328-38151794
Coord A exon
chr13:38164764-38164866
Coord C2 exon
chr13:38167516-38167664
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGGTTTCTTTGTCTCCACAGTCA
3' ss Score
9.45
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GGAGGAGACTCGCACCGCCTCGACCAACACCAACACCCAGGCGCGACCCAGCTCCTCTGAGCCCTCGCTGCCCTCCGAGCCACAGCTCCACTCCGGTTCCCGCGCCTAGCCAGTCGCCGTCCCCGTCTCCGCCCTGCTGGAGCGCTGAGCCCTCGCCAGTCCTCCGCGTTCCGCGCTCCTCTCCCGGAGTCCCTCGCGTGCTCCGAGGCGACGCCTCGCGTATGCCGCGGCGCTGAGCGGCTCTCTTGAGTGACCGCAGACATGAGCTGCAACGGCGGCTCCCACCCGCGGATCAACACGCTGGGTCGCATGACCCGCGCGGAGTCCGGCCCGGACCTGCGCTACGAGATGACCTACAGCGGTGGCGGCGGCGGGGGCGGCGGGGGCGGCGGCGGGGGCACCAGCAGGACGTTCTACTCCCACTCCCGGCGCTGCACCGTCAACGACCAGAACTCCGACGGCTACTG
Seq A exon
TCAAACCGGCACCATGTCTAGACATCAGAATCAGAACACCATCCAAGAAATGCTGCAAAATTGCTCAGACTGTCTGATGCGGGCGGAGCTGATCGCGCAGCCG
Seq C2 exon
GAACTGAAATTCGGAGAAGGGATGCAGCTGGCATGGAACCGAGAGCTGGATGAGTATTTTACACAAGCCAACGATCAGATGGAAATCATAGACGGCTTGATCCGAGAGATGAGGCAGATGGGCCAGCCCTGTGATGCGTATCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.343 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCTACGAGATGACCTACA
R:
CCATCTGCCTCATCTCTCGGA
Band lengths:
251-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types