BtaEX6099222 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47700890-47714288:-
Coord C1 exon
chr23:47714089-47714288
Coord A exon
chr23:47702301-47702403
Coord C2 exon
chr23:47700890-47701038
Length
103 bp
Sequences
Splice sites
3' ss Seq
TCTCTGTGTTTTTCCTTCAGTCA
3' ss Score
10.1
5' ss Seq
CCCGTAAGC
5' ss Score
4.37
Exon sequences
Seq C1 exon
ATGAGCTGCAACGGAGGCTCGCACCCGCGCATCAACACGCTGGGCCGCATGACCCGCGCCGAGTCCGGCCCCGACCTGCGCTACGAGATGACCTGCGGCGGGGTCGGCGGGGGCGGCGGCGGCGGCGGCGGCGGGGGCACCAGCAGGATGTACTACTCGCGGCGCTGCACGGTCACCGACCAGAACTCGGACGGCTACGG
Seq A exon
TCAAACGGGAACGATGTCCAGGCACCAGAATCAGAACACCATCCAGGAGCTCCTGCAGAACTGCTCCGACTGCCTGATGAGGGCGGAGCTCATCGTGCAGCCC
Seq C2 exon
GAACTGAAGTATGGAGATGGAATTCAGCTGGCCCGGAGCAGAGAGCTGGACGAGTGTTTCGCCCAGGCCAACGATCAGATGGAAATTACTGATAGCTTGATCAGAGAGATGCGGCAGATGGGCCAGCCCTGTGATGCTTATCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.418 A=0.400 C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCTACGAGATGACCTG
R:
TCTGCCGCATCTCTCTGATCA
Band lengths:
243-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]