GgaEX6020304 @ galGal3
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
NA
Coordinates
chr2:65717975-65727761:-
Coord C1 exon
chr2:65727571-65727761
Coord A exon
chr2:65719473-65719575
Coord C2 exon
chr2:65717975-65718123
Length
103 bp
Sequences
Splice sites
3' ss Seq
ATTTCTCTCTTCGCCAACAGTCA
3' ss Score
8.22
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATGAGCATGAACGGCGGCTCGCACCCGCGGATCAACACGCTGGGCCGCATGGCGCGGGCCGACTCGGGCACCGACCTGCGCTACGAGATGAGCTCCCATGTGGTGGGCGGCGGCGGCGGCGGCACCCACACCCACAAGACCTACTATTACCAGAAGACCTACGGGGGGGACTACGCCTCCGACGGGTACGG
Seq A exon
TCAGAATGGGACCTGTACAGTTACCAGACGTCAGAACACCATTCAGGAGCTTCTGCAAAACTGTTCGGATTGCCTGATGAGAGCTGAGCTCATAGTACAACCT
Seq C2 exon
GAATTGAAATATGGTGATGGTGTCCAGATTAGAGGAAACAGAGATCTGGAAGAATGTTTTGCGCAGGCAAATGACCAAATGGACATCCTGGATGGGCTGATCCGAGAGCTAAGGCAGATGAATCAGCCCTGTGAAATGTATCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'1-1,'1-0,2-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.453 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGAGATGAGCTCCCATG
R:
TCACAGGGCTGATTCATCTGC
Band lengths:
246-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]