MmuEX6057993 @ mm9
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38243197-38259533:+
Coord C1 exon
chr13:38243197-38243663
Coord A exon
chr13:38256633-38256735
Coord C2 exon
chr13:38259385-38259533
Length
103 bp
Sequences
Splice sites
3' ss Seq
GGGTTTCTTTGTCTCCACAGTCA
3' ss Score
9.45
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GGAGGAGACTCGCACCGCCTCGACCAACACCAACACCCAGGCGCGACCCAGCTCCTCTGAGCCCTCGCTGCCCTCCGAGCCACAGCTCCACTCCGGTTCCCGCGCCTAGCCAGTCGCCGTCCCCGTCTCCGCCCTGCTGGAGCGCTGAGCCCTCGCCAGTCCTCCGCGTTCCGCGCTCCTCTCCCGGAGTCCCTCGCGTGCTCCGAGGCGACGCCTCGCGTATGCCGCGGCGCTGAGCGGCTCTCTTGAGTGACCGCAGACATGAGCTGCAACGGCGGCTCCCACCCGCGGATCAACACGCTGGGTCGCATGACCCGCGCGGAGTCCGGCCCGGACCTGCGCTACGAGATGACCTACAGCGGTGGCGGCGGCGGGGGCGGCGGGGGCGGCGGCGGGGGCACCAGCAGGACGTTCTACTCCCACTCCCGGCGCTGCACCGTCAACGACCAGAACTCCGACGGCTACTG
Seq A exon
TCAAACCGGCACCATGTCTAGACATCAGAATCAGAACACCATCCAAGAAATGCTGCAAAATTGCTCAGACTGTCTGATGCGGGCGGAGCTGATCGCGCAGCCG
Seq C2 exon
GAACTGAAATTCGGAGAAGGGATGCAGCTGGCATGGAACCGAGAGCTGGATGAGTATTTTACACAAGCCAACGATCAGATGGAAATCATAGACGGCTTGATCCGAGAGATGAGGCAGATGGGCCAGCCCTGTGATGCGTATCAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.754 A=0.343 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCTACGAGATGACCTACA
R:
CCATCTGCCTCATCTCTCGGA
Band lengths:
251-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: