DreEX6025013 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1767465-1774155:+
Coord C1 exon
chr2:1767465-1767927
Coord A exon
chr2:1773857-1773947
Coord C2 exon
chr2:1774034-1774155
Length
91 bp
Sequences
Splice sites
3' ss Seq
AATTTTCCCTCTGTTTTCAGCAT
3' ss Score
9.74
5' ss Seq
ACTGTACGT
5' ss Score
6.33
Exon sequences
Seq C1 exon
TGCAGGAATCCTGTGGGAAAGTGCAAGGTTTATGTCAATGGCTGTCATCTCACTCTCTCTGGAGCCGCGCCTCACGGGGAATCAGGTGTGGTTTAACGGCAAAACCGGAACTATCCAGCGCGCAGCGGCCAGTATCCGCGCAGACACCGACCGGAGAGCACCGTGAACACCACTTTTACAACTTTCCCAAGCTGAAACTACTTTAAAAACTATAACAGGCTCTGCGGTCCCGTCCAGAGATGAGTTTGTCCGGTTCTCAGACCAGGCTCCACCAGATCAGCCGCAGGTCCAGTTCGCGGCCAGACCTCACCGCCGTCGGCTACAGTTTACCGAGGAACGACGGAGCTCAGTTTTTCACGAGTGGAAACGGATACCAGTCCGACTATAATGACGGCTACATGCAGACCTACACGCAGACTTTCTCCAAAAACTCTCAGGGTGGAGGAGCTGGAGGAGCCCAGAG
Seq A exon
CATGTCTTCCATGGCGGTTCAGAAGCGAGCTCAGATGTTGTACAGTGACTGCATGGGATTCCTGCAGCGAGCGCAGGGCCTCCTGGAGACT
Seq C2 exon
ATGGGACCTGCTTCTGAGGTGGACAAGAACATGATGGCAGCGCAGGACGCCATGGATCAGCTGCGGAAATGTGCGGTGGACATGAGGAACGCCGGTCTGCCTAATGACATGATCCTCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=0.049 C2=0.195
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGGCTACAGTTTACCGAG
R:
TTGTCCACCTCAGAAGCAGGT
Band lengths:
176-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]