BtaEX6099228 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47690935-47693406:-
Coord C1 exon
chr23:47693245-47693406
Coord A exon
chr23:47692410-47692514
Coord C2 exon
chr23:47690935-47691030
Length
105 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTCTTTCATTCACAGATA
3' ss Score
11.29
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
AAAGCGTCCTTCGAGAGGATGGACCACCTTCGGCAGCTGCAGAACATCATCCAGGCCACGTCCCGCGAGATCATGTGGATCAACGACTGTGAGGAGGAGGAGCTGCTGTATGACTGGAGCGACAGGAACACCAACATCGCCCAGAAGCAGGAGGCCTTCTCG
Seq A exon
ATACGCATGAGTCAGCTGGAGGTTAAGGAGAAAGAGCTCAATAAGCTTAAACAAGAAAGTGACCAACTTGTCCTCAATCAACATCCAGCTTCAGACAAAATTGAG
Seq C2 exon
GCCTATATGGACACCCTGCAGACCCAGTGGAGCTGGATTCTTCAGATCACCAAATGCATTGATGTTCATCTCAAAGAAAATGCTGCCTACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(14.7=25.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGAGGATGGACCACCT
R:
AGGCAGCATTTTCTTTGAGATGA
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]