MmuEX6057987 @ mm9
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38266937-38269151:+
Coord C1 exon
chr13:38266937-38267098
Coord A exon
chr13:38268265-38268369
Coord C2 exon
chr13:38269056-38269151
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTCCTTTCTTTTCACAGATA
3' ss Score
11.49
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAAGCCTCCTTCGAGAGGATGGACCACCTGCGCCAGCTGCAGAACATCATCCAGGCCACCTCTCGAGAGATCATGTGGATCAATGACTGCGAGGAGGAGGAGCTGCTCTATGACTGGAGCGACAAGAACACCAACATCGCTCAGAAGCAGGAGGCCTTCTCT
Seq A exon
ATACGCATGAGTCAACTGGAGGTCAAGGAAAAGGAACTCAATAAGCTTAAACAAGAAAGTGACCAGCTTGTCCTCAATCAGCATCCAGCTTCAGACAAAATTGAG
Seq C2 exon
GCATACATGGACACTCTTCAGACGCAGTGGAGCTGGATTCTGCAGATCACCAAGTGCATTGATGTCCATCTCAAAGAAAACGCTGCTTACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGAGGATGGACCACCT
R:
AAGCAGCGTTTTCTTTGAGATGG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: