DreEX0028432 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1793981-1797625:+
Coord C1 exon
chr2:1793981-1794148
Coord A exon
chr2:1796394-1796498
Coord C2 exon
chr2:1797530-1797625
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATACATCTTTCCTCTCTCAGAAA
3' ss Score
8.58
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAAATGTCCCATGCACGTATGGATCATCTGCGAGACCTACAGAGCATCATCGAGGAGATTTCCAGAGCCATCATGTGGGTCAACGACAGAGAGGAGGAGGAGCTGGTGTTTGACTGGGGCGATAAAAACATTGACAACTACATCCCTCAAAAACAAGAGAGCTACTCG
Seq A exon
AAACTGATGAGTGATCTGGAGGAGAAGGAGAAAGAGCTGAATAAGCTAAAGGCAAAGGTGGACATGCTGCTGAAGAACCAGCACCCGGCATCTGATAAGATAGAG
Seq C2 exon
GCTTACATGGACACACTGCAAACCCAGTGGAGCTGGTTACTGCAGATCACCAAGTGCATCCATGTTCACCTGAAGGAGAACGCAGCCTACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PU(41.0=76.8)
A:
PF0043516=Spectrin=FE(32.4=100)
C2:
PF0043516=Spectrin=PD(23.8=78.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACGTATGGATCATCTGCG
R:
GTAGGCTGCGTTCTCCTTCAG
Band lengths:
247-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]