GgaEX6020309 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64631020-64633489:-
Coord C1 exon
chr2:64633328-64633489
Coord A exon
chr2:64632253-64632357
Coord C2 exon
chr2:64631020-64631115
Length
105 bp
Sequences
Splice sites
3' ss Seq
CACTGTGTTTTGGTTATTAGAAA
3' ss Score
5.91
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AAATACTCCTTTGAGAGAATGGATCAGCTCCGTCAATTCCAGAACCTTATCCAAGCAACCAGCAGAGAGATCATGTGGATCAATGACTGTGAGGAAGAAGAGCTTCTCTACGACTGGAGCGACAGGAACACAGATATCTCCAGGAAGCAGGAGGCCTTCTCT
Seq A exon
AAACGTATGAGTGAACTGGAGCTTAAAGAAAAAGAACTCAACAAGCTAAAGCAAGAAAGTGACCAGCTTGTGCTCAACCAGCACCCTGCTTCAGACAAAATTGAG
Seq C2 exon
GCCTACATGGATACACTACAAACTCAGTGGAGCTGGATTCTTCAGATCACGAAGTGCATTGATGTTCATTTGAAAGAGAATGCAGCTTACTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'7-8,'7-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.029 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(26.2=51.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAGAGAATGGATCAGCTCC
R:
AGCTGCATTCTCTTTCAAATGAACA
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]