BtaEX6099230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47689798-47691030:-
Coord C1 exon
chr23:47690935-47691030
Coord A exon
chr23:47690489-47690614
Coord C2 exon
chr23:47689798-47689950
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTCACCCCCGTTCTTCACAGTTT
3' ss Score
8.25
5' ss Seq
GAGGTAGCG
5' ss Score
5.65
Exon sequences
Seq C1 exon
GCCTATATGGACACCCTGCAGACCCAGTGGAGCTGGATTCTTCAGATCACCAAATGCATTGATGTTCATCTCAAAGAAAATGCTGCCTACTTTCAG
Seq A exon
TTTTTTGAAGAGGCTCAGTCGACGGAAGCCTACCTGAAGGGTCTCCAAGACTCCATCAGGAAGAAGTACCCTTGTGACAAGAACACGCCCCTGCAGCGCCTGCTGGAGCAGATCAAGGAGCTGGAG
Seq C2 exon
AAAGAACGGGAGAAAATCCTTGAATACAAGCGCCAGGTGCAGAGCTTGGTAAACAAGTCCAAGAAGATTGTGCAGCTGAAACCGCGTAACCCGGACTACAGAAGCAATAAACCCATTATTCTCAGGGCTCTCTGCGACTACAAGCAGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTATATGGACACCCTGCAG
R:
CTGCTTGTAGTCGCAGAGAGC
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]