MmuEX0015737 @ mm9
Exon Skipping
Gene
ENSMUSG00000054889 | Dsp
Description
desmoplakin [Source:MGI Symbol;Acc:MGI:109611]
Coordinates
chr13:38269056-38271069:+
Coord C1 exon
chr13:38269056-38269151
Coord A exon
chr13:38270303-38270428
Coord C2 exon
chr13:38270917-38271069
Length
126 bp
Sequences
Splice sites
3' ss Seq
ATTGCTGTCATTCCCAACAGTTT
3' ss Score
9.06
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
GCATACATGGACACTCTTCAGACGCAGTGGAGCTGGATTCTGCAGATCACCAAGTGCATTGATGTCCATCTCAAAGAAAACGCTGCTTACTTCCAG
Seq A exon
TTTTTTGAAGAGGCTCAGTCAACTGAAGCCTACCTGAAGGGCCTGCAGGACTCCATCAGGAAGAAATACCCCTGTGACAAGAATATGCCTCTCCAGCACCTGCTGGAGCAGATCAAAGAGCTGGAG
Seq C2 exon
AAAGAACGGGAGAAGATCATTGAATACAAGCGTCAGGTGCAGAACTTGGTAAACAAGTCCAAGAAGATCGTGCAGCTGAAACCTCGGAACCCAGACTACAGGAGCAACAAGCCCATTATCCTCAGGGCTCTCTGCGACTACAAACAAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054889-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGACACTCTTCAGACGC
R:
TGGTCTTGTTTGTAGTCGCAGA
Band lengths:
244-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: