DreEX6025010 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1797530-1799063:+
Coord C1 exon
chr2:1797530-1797625
Coord A exon
chr2:1797840-1797965
Coord C2 exon
chr2:1798911-1799063
Length
126 bp
Sequences
Splice sites
3' ss Seq
AACTTTGCTATCTTTTTCAGTTC
3' ss Score
9.28
5' ss Seq
GAGGTGAAG
5' ss Score
4.41
Exon sequences
Seq C1 exon
GCTTACATGGACACACTGCAAACCCAGTGGAGCTGGTTACTGCAGATCACCAAGTGCATCCATGTTCACCTGAAGGAGAACGCAGCCTACAGCCAG
Seq A exon
TTCTTCAAGGAGGCCAATGAGACGTACAGCAGACTGCAGAAAGACCATGAAAACATCCGGAAGAAGTTCGGCTGCGACAAAACCACACCTCTGGAGAACCTCAACGACATGCTGAAAAACCTGGAG
Seq C2 exon
AAAGAGAAGGAGAAGGTCATCGAGAATAAGCGTCAGGTTCAGACGCTGGTCAGCAAGTCCAAGAACATCGTGTGTCTGAAACCTCGTAATCCAGAGGAGAAGAGCAGCAGTCCGGTCATAGTGCAAGCTCTGTGTGACTTCAAACAGGATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'9-12,'9-10,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.214 C2=0.098
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(23.8=78.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATGGACACACTGCAAACCC
R:
TCCTGTTTGAAGTCACACAGAGC
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]