GgaEX1021084 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64629795-64631115:-
Coord C1 exon
chr2:64631020-64631115
Coord A exon
chr2:64630347-64630472
Coord C2 exon
chr2:64629795-64629947
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCACAACTTTTTTCCTGTAGTTC
3' ss Score
7.43
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GCCTACATGGATACACTACAAACTCAGTGGAGCTGGATTCTTCAGATCACGAAGTGCATTGATGTTCATTTGAAAGAGAATGCAGCTTACTTTCAG
Seq A exon
TTCTTTGAGGAGGCCCAAGCTACAGAGAGCTATCTGAAGAATTTACAGGACTCCATCAGAAAGAAGTTCATATGTGATAAGAGCATGTCACTTCAGAGCTTGCTGGAGCAGATCAAAGAGCTGGAG
Seq C2 exon
AATGAACGAGAGAGAATTCTTGAATACAAGAGGCAAGTGCAGAGTTTGGTGAATAAATCCAAGAAGATTGTGCAGCTGAAGCCACGTAACCCAGATTACCGGAGTAACAAGCCCATTATCCTCAAGGCTCTATGTGACTACAAACAGGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACACTACAAACTCAGTGGA
R:
CAGATCCTGTTTGTAGTCACATAGA
Band lengths:
242-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]