BtaEX6099232 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015106 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr23:47687228-47689950:-
Coord C1 exon
chr23:47689798-47689950
Coord A exon
chr23:47688510-47688664
Coord C2 exon
chr23:47687228-47687354
Length
155 bp
Sequences
Splice sites
3' ss Seq
CGGTGCTGCTTGCCTTGCAGAAA
3' ss Score
9.72
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AAAGAACGGGAGAAAATCCTTGAATACAAGCGCCAGGTGCAGAGCTTGGTAAACAAGTCCAAGAAGATTGTGCAGCTGAAACCGCGTAACCCGGACTACAGAAGCAATAAACCCATTATTCTCAGGGCTCTCTGCGACTACAAGCAGGACCAG
Seq A exon
AAAATTGTCCACAAAGGGGACGAATGTATCCTGAAAGACAACAATGAGCGGAGCAAGTGGTACGTGACCGGCCCGGGGGGCGTGGACATGCTCGTGCCCTCTGTGGGCCTCATCATCCCTCCGCCCAACCCTCTGGCCGTGGACCTCTCGAGCAA
Seq C2 exon
GATCGAGCAGTACTACGAAGCCATCCTGGCCCTGTGGAACCAGCTCTACATCAACATGAAGAGCCTGGTGTCCTGGCACTACTGCATGATAGATATCGAGAAGATCAAGGCCATGACCATCGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015106-'13-11,'13-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGCAGAGCTTGGTAAA
R:
GCGATGGTCATGGCCTTGATC
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]