GgaEX6020312 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64627675-64629947:-
Coord C1 exon
chr2:64629795-64629947
Coord A exon
chr2:64628491-64628645
Coord C2 exon
chr2:64627675-64627801
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTATGTTCCTTACAGAAA
3' ss Score
9.83
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AATGAACGAGAGAGAATTCTTGAATACAAGAGGCAAGTGCAGAGTTTGGTGAATAAATCCAAGAAGATTGTGCAGCTGAAGCCACGTAACCCAGATTACCGGAGTAACAAGCCCATTATCCTCAAGGCTCTATGTGACTACAAACAGGATCTG
Seq A exon
AAAACAGTGCGCAAAGGAGATGAATGCATCCTGAAGGACAACAATGAGCGCAGCAAGTGGTTGGTGACTGGCCCTGGAGGAGTGGATATGCTGGTGCCATCTGTTAGTCTGATCATCCCACCCCCAAATCCATTAGCAGTGGATCTTGCTACCAA
Seq C2 exon
AATTGAGCAATACTACGAAGCTATTCTGGCTTTGTGGAACCAGCTGTATATCAACATGAAGAGCCTGGTATCTTGGCATTATTGCATGATTGACATTGAGAAAATCAGAGCGATGACTATTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAAGTGCAGAGTTTGGT
R:
AGCAATAGTCATCGCTCTGATT
Band lengths:
248-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]