RnoEX6053430 @ rn6
Exon Skipping
Gene
ENSRNOG00000013928 | Dsp
Description
desmoplakin [Source:RGD Symbol;Acc:1305794]
Coordinates
chr17:27303156-27306193:-
Coord C1 exon
chr17:27306041-27306193
Coord A exon
chr17:27304008-27304162
Coord C2 exon
chr17:27303156-27303282
Length
155 bp
Sequences
Splice sites
3' ss Seq
CATCTCTGTTTCTTTGGCAGAAA
3' ss Score
9.02
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AAAGAACGGGAGAAGATCCTGGAATACAAGCGTCAGGTGCAGAACTTGGTGAACAAGTCCAAGAAGATCGTGCAGCTGAAGCCTCGGAACCCAGACTACAGAAGCAACAAACCCATTATTCTCAGGGCCCTCTGCGACTACAAACAAGACCAG
Seq A exon
AAAATCGTCCACAAGGGGGATGAATGCATCCTCAAGGACAACAATGAGCGCAGCAAGTGGTACGTGACCGGCCCCGGAGGCGTTGACATGCTTGTCCCTTCTGTGGGCCTGATCATCCCTCCTCCAAACCCACTGGCTGTGGACCTTTCTTGCAA
Seq C2 exon
GATTGAGCAGTACTATGAAGCCATCTTGGCTCTGTGGAACCAGCTCTACATCAACATGAAGAGCCTGGTGTCTTGGCATTACTGTATGATTGACATCGAGAAGATCAGAGCCATGACTATTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013928-'15-12,'15-11,16-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATACAAGCGTCAGGTGCA
R:
TGGCAATAGTCATGGCTCTGA
Band lengths:
258-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]