DreEX6025008 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1798911-1800176:+
Coord C1 exon
chr2:1798911-1799063
Coord A exon
chr2:1799804-1799958
Coord C2 exon
chr2:1800050-1800176
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCCCAGTTTGTGTTTTACAGAAA
3' ss Score
7.61
5' ss Seq
CAAGTACAA
5' ss Score
-1.09
Exon sequences
Seq C1 exon
AAAGAGAAGGAGAAGGTCATCGAGAATAAGCGTCAGGTTCAGACGCTGGTCAGCAAGTCCAAGAACATCGTGTGTCTGAAACCTCGTAATCCAGAGGAGAAGAGCAGCAGTCCGGTCATAGTGCAAGCTCTGTGTGACTTCAAACAGGATCAA
Seq A exon
AAAGGCATTATGAAGGGCAATGAAGGTATCCTGAAAGACAACTCTCAGCGCAGTAAGTGGCACGTGACTGGACCTGGAGGACTGGAAATGCTCATCCCGTCTGTGTGTCTGATCATCCCACCGCCAAACCCTCTGAGCATCAGCCTGGCAAACAA
Seq C2 exon
GAACGAGCAGTATTATGAAGCCATTATGTCCATATGGAGTCAGCTGTACATCAACATCAAGAGTCTGATATCCTGGCAGTACTGTCTGAGAGACATCCAGCACATCAACTCCCTCACTCTCTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.115 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATCGAGAATAAGCGTCAGG
R:
GTGAGGGAGTTGATGTGCTGG
Band lengths:
256-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]