BtaEX6099824 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009693 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr26:15832225-15842812:+
Coord C1 exon
chr26:15832225-15832331
Coord A exon
chr26:15840360-15840440
Coord C2 exon
chr26:15842724-15842812
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTATTCTTGTTTTTCCCCAGAAC
3' ss Score
11.4
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCGTAGTACGAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTTCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG
Seq A exon
AACTTTATGAAATCTTCCTCTCAAGAGCAAAGGAACGGTGGAAAAGTTTCAGTGAAACAAGTTCAGAGAATGATGTAGAAG
Seq C2 exon
GTGTATCTGTTGCTGATCGAGAGGCCAGTCTAGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009693-'11-11,'11-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
A:
PF0056613=RabGAP-TBC=FE(11.9=100)
C2:
PF0056613=RabGAP-TBC=FE(12.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGAATTGTGGTGGCAGG
R:
TGTAGAGAGATGGAAATGTACGGGA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]