DreEX6054115 @ danRer10
Exon Skipping
Gene
ENSDARG00000038237 | tbc1d12a
Description
TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
Coordinates
chr17:23221275-23223535:-
Coord C1 exon
chr17:23223429-23223535
Coord A exon
chr17:23223169-23223249
Coord C2 exon
chr17:23221275-23221369
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTGTTTTGTGTGTTTTAGAAC
3' ss Score
11.66
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GCGTAACACTCGGCGGGTACGCGACCTTTGGTGGCAGGGCGTTCCTCCCAGCGTCCGAGGAAAGGTCTGGTGCCTCGCCATCGGGAATGAACTCAACATCACTCCAG
Seq A exon
AACTGTATGAGATCTTCCTGTCCAGAGCCAAAGAGAAGTGGAGGAGCTTCAGTGAGACCAGTTCAGTCAATGAAAATGAAG
Seq C2 exon
ATTGTGGCGTGTCACTGGCAGACCGAGAGTCTAGTCTGGATTTAATCAAGCTGGATATTTCTAGAACCTTTCCCTCGCTCTACATATTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038237-'5-11,'5-8,6-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACGCGACCTTTGGTGG
R:
TGTAGAGCGAGGGAAAGGTTCT
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]