GgaEX7006423 @ galGal4
Exon Skipping
Gene
ENSGALG00000006538 | TBC1D12
Description
TBC1 domain family, member 12 [Source:HGNC Symbol;Acc:HGNC:29082]
Coordinates
chr6:19636453-19637724:+
Coord C1 exon
chr6:19636453-19636559
Coord A exon
chr6:19637030-19637110
Coord C2 exon
chr6:19637630-19637724
Length
81 bp
Sequences
Splice sites
3' ss Seq
CGTTTTGTTTTTACTTGCAGAAC
3' ss Score
11.05
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GCGTGCTACCCGGAGAGTTCGAGAGCTGTGGTGGCAGGGATTACCACCAAGTGTTCGTGGGAAAGTGTGGAGTCTAGCAGTGGGGAACGAGTTAAATATCACTCCTG
Seq A exon
AACTCTATGAAATCTTCTTATCTAGAGCTAAGGAACGATGGAAAAGCTTCAGTGAAACAAGTTCTGAGAATGATGTAGAAG
Seq C2 exon
ATGCTAGTGCATCTGTTGCTGATCGTGAGGCCAGCCTGGAGCTAATTAAGTTGGATATATCACGCACATTTCCATCCCTGTATATTTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006538-'17-13,'17-12,18-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.062
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(8.8=54.1)
A:
PF0056613=RabGAP-TBC=FE(11.8=100)
C2:
PF0056613=RabGAP-TBC=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGTTCGAGAGCTGTGGT
R:
CAGGGATGGAAATGTGCGTGA
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]