DreEX6067715 @ danRer10
Exon Skipping
Gene
ENSDARG00000073771 | tbc1d12b
Description
TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
Coordinates
chr12:5399291-5400319:-
Coord C1 exon
chr12:5400213-5400319
Coord A exon
chr12:5399770-5399850
Coord C2 exon
chr12:5399291-5399376
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTGATTCTTTTTTAGATT
3' ss Score
12.02
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCGTGGCACACGGCGTGTGAGGGATCTGTGGTGGCAAGGTCTTCCTCCCAACGTGAGGGGTAAAGTCTGGAGTTTGGCCGTTGGGAATGAGCTGAACATCACCTCAG
Seq A exon
ATTTGTATGAGATCTTTCTGTCGCGGGCCAAGGAGCGATGGAAGAGCTTCAGAGAAACGGGCAGTGAGATTGAGTCAGATG
Seq C2 exon
TGGACAGTGCCGACCGCGAGTCTAGTCTGGATCTGATCAAGCTAGACATCTCCCGCACATTCCCATCCCTCTTCATCTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073771-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.034
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(8.9=54.1)
A:
PF0056613=RabGAP-TBC=FE(12.0=100)
C2:
PF0056613=RabGAP-TBC=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGAGGGATCTGTGGTG
R:
GAAGAGGGATGGGAATGTGCG
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]