MmuEX6032689 @ mm9
Exon Skipping
Gene
ENSMUSG00000048720 | Tbc1d12
Description
TBC1D12: TBC1 domain family, member 12 [Source:MGI Symbol;Acc:MGI:2384803]
Coordinates
chr19:38975799-38985585:+
Coord C1 exon
chr19:38975799-38975905
Coord A exon
chr19:38982262-38982342
Coord C2 exon
chr19:38985497-38985585
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTTTTTTTTCCCCAGAAC
3' ss Score
11.52
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCGTAGTACCAGAAGAGTTCGAGAATTGTGGTGGCAGGGATTGCCCCCTAGTGTCCGTGGGAAAGTTTGGAGTCTAGCTGTAGGAAATGAACTAAATATCACTCCTG
Seq A exon
AACTTTATGAAATCTTTCTTTCAAGAGCAAAAGAACGTTGGAAAAGCTTCAGTGAATCAAGTTCTGAGAACGACACGGAAG
Seq C2 exon
GTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTTGGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048720-'9-9,'9-8,10-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.083 C2=0.022
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(25.3=54.1)
A:
PF0056613=RabGAP-TBC=FE(11.9=100)
C2:
PF0056613=RabGAP-TBC=FE(12.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGAATTGTGGTGGCAGG
R:
TGTAGAGAGATGGAAATGTACGGGA
Band lengths:
168-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: