BtaEX6099913 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020589 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3363]
Coordinates
chr26:17104566-17121489:+
Coord C1 exon
chr26:17104566-17104693
Coord A exon
chr26:17118130-17118247
Coord C2 exon
chr26:17121339-17121489
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTGTTTTGCCCTCAGTTT
3' ss Score
8.04
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AATCTGAACTGAAGGTATTTTGCTCTAAAAACATACTGAGCATACTTGGTTTCTCCTGCATCATCGCTGTGATAGCATTGCTCGCTCTGGGGCTGACCCAGAACAAAGCACTGCCAGAAAATGTTAAG
Seq A exon
TTTGGGATTGTGCTGGATGCGGGCTCCTCTCATACGAGTTTGTACATCTATAGATGGCCGGCAGAGAAGGAGAATGACACGGGGGTGGTGACTCAGATAGAAGAATGCAAGCTTAAAG
Seq C2 exon
GTCCCGGAATCTCAGGCTTTGCTAAAAAAGTAAATGAAATCAATGTTTATCTGACGGCATGCATGGAAAGAGCCCAGAAAGTGATTCCGTCAATCCAGCACATGGAAACACCTGTGTACCTGGGAGCCACGGCCGGCATGCGGTTGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020589-'8-4,'8-3,10-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.018 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.8=18.6)
A:
PF0115012=GDA1_CD39=FE(8.9=100)
C2:
PF0115012=GDA1_CD39=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAACTGAAGGTATTTTGCTCT
R:
CCCAGGTACACAGGTGTTTCC
Band lengths:
250-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]