GgaEX1022493 @ galGal3
Exon Skipping
Gene
ENSGALG00000007078 | F1P328_CHICK
Description
NA
Coordinates
chr6:23437687-23439101:+
Coord C1 exon
chr6:23437687-23437821
Coord A exon
chr6:23438185-23438302
Coord C2 exon
chr6:23438951-23439101
Length
118 bp
Sequences
Splice sites
3' ss Seq
AGGATCTATTTTGTCCACAGTAT
3' ss Score
6.06
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GTCACAGGTACCAAACCAAAGATGTCCACAACAAGGAAAATTCTACTCATACTAGGATTCCTCTCCACTTTGGCTGCAATTGCTTTAATTACTGTAGCAGTGACCCAAAACCAGCCACTTCCGAAGAATATCAAG
Seq A exon
TATGGGATTGTGCTAGATGCGGGGTCATCCCACACAAACCTGTACGTGTACGAGTGGCCAGCAGAGAAGGAGAATGACACTGGAGTGGTGCAGCAGGTGGAGGTGTGTAAAGTCGAAG
Seq C2 exon
GCCCAGGGATCTCAGGTTACTCCCAGACCACAGAGAAGGCAGGTCCCTCTCTGGTGCAGTGCCTCAGACAAGCAGAAGGGGTGATTCCCTTAAAGCAGCACCAAGAGACGCCCGTCTACCTCGGAGCAACTGCTGGCATGCGGCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078-'1-2,'1-1,4-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.8=17.8)
A:
PF0115012=GDA1_CD39=FE(13.7=100)
C2:
PF0115012=GDA1_CD39=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGATGTCCACAACAAGGA
R:
GCAGTTGCTCCGAGGTAGAC
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]