GgaEX1022493 @ galGal4
Exon Skipping
Gene
ENSGALG00000007078 | ENTPD1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:RefSeq peptide;Acc:NP_001012925]
Coordinates
chr6:21572238-21573650:+
Coord C1 exon
chr6:21572238-21572371
Coord A exon
chr6:21572734-21572851
Coord C2 exon
chr6:21573500-21573650
Length
118 bp
Sequences
Splice sites
3' ss Seq
AGGATCTATTTTGTCCACAGTAT
3' ss Score
6.06
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TCACAGGTACCAAACCAAAGATGTCCACAACAAGGAAAATTCTACTCATACTAGGATTCCTCTCCACTTTGGCTGCAATTGCTTTAATTACTGTAGCAGTGACCCAAAACCAGCCACTTCCGAAGAATATCAAG
Seq A exon
TATGGGATTGTGCTAGATGCGGGGTCATCCCACACAAACCTGTACGTGTACGAGTGGCCAGCAGAGAAGGAGAATGACACTGGAGTGGTGCAGCAGGTGGAGGTGTGTAAAGTCGAAG
Seq C2 exon
GCCCAGGGATCTCAGGTTACTCCCAGACCACAGAGAAGGCAGGTCCCTCTCTGGTGCAGTGCCTCAGACAAGCAGAAGGGGTGATTCCCTTAAAGCAGCACCAAGAGACGCCCGTCTACCTCGGAGCAACTGCTGGCATGCGGCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007078-'9-8,'9-7,12-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.8=17.8)
A:
PF0115012=GDA1_CD39=FE(33.3=100)
C2:
PF0115012=GDA1_CD39=FE(11.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAAGATGTCCACAACAAGGA
R:
GCAGTTGCTCCGAGGTAGAC
Band lengths:
254-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]