DreEX6069978 @ danRer10
Exon Skipping
Gene
ENSDARG00000045066 | entpd1
Description
ectonucleoside triphosphate diphosphohydrolase 1 [Source:ZFIN;Acc:ZDB-GENE-040801-58]
Coordinates
chr12:30637993-30641640:-
Coord C1 exon
chr12:30641513-30641640
Coord A exon
chr12:30641307-30641424
Coord C2 exon
chr12:30637993-30638143
Length
118 bp
Sequences
Splice sites
3' ss Seq
GGTCTCTGTACACTCAACAGTAT
3' ss Score
2.69
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AAGTAAAAGTCAAAAACCCATGGCACAGGCCGGTTGTCATCTTTCTGATGGCTGTTGTTGCCGTGGGGATTGTCATCATGGTATCCATTTCTGTTGTCCAGCACAAGCCTTTACCCCAAAAGTACAAG
Seq A exon
TATGGAATAGTCCTGGATGCCGGCTCCTCTCACACCTCTGTGTTTATCTATAAATGGCCAGCAGAGAAAGAGAACAACACAGGCATGGTACAGCAGCATCACACGTGCAATGTTAAAG
Seq C2 exon
GCAAAGGCATCTCCAGTTACTTCGATAAACCACATGGGGCTGGTGCATCTCTGGAGGAGTGCATGAAGGAGGCCAAGGAGAAAATACCTGCTCACAGACACAGCGAAACCCCTGTCTACCTGGGAGCCACGGCTGGCATGAGACTGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045066-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.217 C2=0.085
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=18.6)
A:
PF0115012=GDA1_CD39=FE(25.0=100)
C2:
PF0115012=GDA1_CD39=FE(11.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCCGGTTGTCATCTTTC
R:
CAGTCTCATGCCAGCCGTG
Band lengths:
250-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]