BtaEX6100311 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018604 | SEMA4G
Description
Bos taurus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G (SEMA4G), mRNA. [Source:RefSeq mRNA;Acc:NM_001101117]
Coordinates
chr26:21680729-21684181:+
Coord C1 exon
chr26:21680729-21680877
Coord A exon
chr26:21681145-21681207
Coord C2 exon
chr26:21684083-21684181
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCCTTTACCACCCCCTCCAGATT
3' ss Score
7.84
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGCTCTCTGGGACCCGGCACTTCAAGGGCCAAGCCCAGAACTACTCAACACTGCTGCTGGAGGAGGCCTCTGCAAGGCTGCTGGTGGGAGCCCGAGGTGCCCTGTTCTCTCTCAATGCGCAAGACATAGGAGATGGGACTCACAAAGAG
Seq A exon
ATTCGCTGGGAGGCCTCTCCAGAGATGCAAAGCAAATGTCATCAAAAAGGGAAAAACAACCAG
Seq C2 exon
ACCGAGTGCTTCAACCATGTGCGATTCCTGCAGCGGCTCAATGCCACCCACCTCTACACATGTGGGACTCATGCCTTCCAGCCTCTCTGTGCAGCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018604-'8-7,'8-4,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.762 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(8.1=70.0)
A:
PF0140314=Sema=FE(4.6=100)
C2:
PF0140314=Sema=FE(7.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCCCTGTTCTCTCTCA
R:
GGAAGGCATGAGTCCCACATG
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]