HsaEX6090030 @ hg38
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100969518-100977730:+
Coord C1 exon
chr10:100969518-100969591
Coord A exon
chr10:100973547-100973609
Coord C2 exon
chr10:100977632-100977730
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTTTGCCTCCACTAGATC
3' ss Score
7.78
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
CCTCTCGCAGCTGGTGCTGTGGGGCCGCGGAGCCGCGCGTCGCTGTCTCTATGGCCCCGGATCCGAGCGCAAAG
Seq A exon
ATCCACTGGGAAGCCTCCCCAGAGATGCAAAGCAAATGTCATCAAAAAGGGAAAAACAACCAG
Seq C2 exon
ACGGAGTGCTTTAACCATGTGCGGTTCCTGCAGCGGCTCAATTCTACCCACCTCTATGCATGTGGGACTCACGCCTTCCAGCCCCTCTGTGCAGCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539_MULTIEX1-5/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.660 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0140314=Sema=FE(17.4=100)
C2:
PF0140314=Sema=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCGCTGTCTCTATGGC
R:
AATGGCTGCACAGAGGGGC
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains