HsaEX6090030 @ hg19
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:10735]
Coordinates
chr10:102732886-102737487:+
Coord C1 exon
chr10:102732886-102733034
Coord A exon
chr10:102733304-102733366
Coord C2 exon
chr10:102737389-102737487
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATTCCCTTTGCCTCCACTAGATC
3' ss Score
7.78
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGCTCTCTGGGACCCGGCACTTCAAGGGCCAAGCCCAGAACTACTCAACACTGCTGCTGGAGGAGGCCTCAGCAAGGCTGCTGGTGGGAGCCCGAGGTGCCCTGTTCTCTCTCAGTGCCAACGACATAGGAGATGGGGCTCACAAAGAG
Seq A exon
ATCCACTGGGAAGCCTCCCCAGAGATGCAAAGCAAATGTCATCAAAAAGGGAAAAACAACCAG
Seq C2 exon
ACGGAGTGCTTTAACCATGTGCGGTTCCTGCAGCGGCTCAATTCTACCCACCTCTATGCATGTGGGACTCACGCCTTCCAGCCCCTCTGTGCAGCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-'4-9,'4-8,5-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.639 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(30.4=70.0)
A:
PF0140314=Sema=FE(17.4=100)
C2:
PF0140314=Sema=FE(27.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGCCCAGAACTACTCAA
R:
ACCGCACATGGTTAAAGCACT
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)