RnoEX6007540 @ rn6
Exon Skipping
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264742490-264746092:+
Coord C1 exon
chr1:264742490-264742638
Coord A exon
chr1:264742869-264742931
Coord C2 exon
chr1:264745994-264746092
Length
63 bp
Sequences
Splice sites
3' ss Seq
TGTCCCTTTACTCTCACTAGATC
3' ss Score
8.97
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGCTCTCCTGGATCAGGCACTTCAAGGGCCAAGCCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCCCAAAGGCTGTTGGTGGGAGCTCGAGGTGCCCTGTTCTCTCTCAGTGCCCGTGACATAGGAGATGGGACTCACAAAGAG
Seq A exon
ATCCACTGGGAGGCCTCCCCAGAGATGCAAAGCAAGTGTCATCAGAAAGGGAAAAACAACCAG
Seq C2 exon
ACGGAGTGTTTCAACCATGTGCGATTTCTACAGCGGCTCAATGCCTCCCACTTCTATGCATGTGGGACCCACGCCTTCCAGCCCCTCTGTGCAGCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650-'5-7,'5-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.635 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(48.6=70.0)
A:
PF0140314=Sema=FE(27.8=100)
C2:
PF0140314=Sema=FE(7.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCAACACTGCTGCTGGAGG
R:
TTGAGCCGCTGTAGAAATCGC
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]