BtaEX6100481 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014335 | CYP17A1
Description
Bos taurus cytochrome P450, subfamily XVII (CYP17A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174304]
Coordinates
chr26:23697050-23698463:-
Coord C1 exon
chr26:23698325-23698463
Coord A exon
chr26:23697895-23698124
Coord C2 exon
chr26:23697050-23697136
Length
230 bp
Sequences
Splice sites
3' ss Seq
ACACCCCTCTCTCTCCCCAGTTA
3' ss Score
11.48
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCACTCTAGACATCCTGTCAGACAACCAAAAGGGCATTGCCTTTGCCGACCATGGTGCCCACTGGCAGCTGCATCGGAAGCTGGCACTGAATGCCTTTGCCCTGTTCAAGGATGGCAACCTGAAGTTAGAGAAGATCA
Seq A exon
TTAATCAGGAAGCCAATGTGCTCTGTGATTTCCTGGCCACCCAGCATGGAGAGGCCATAGATCTGTCCGAGCCTCTCTCTCTGGCGGTGACCAACATAATCAGCTTTATCTGCTTCAACTTCTCCTTCAAGAATGAGGATCCTGCCCTGAAGGCCATACAAAATGTCAATGATGGCATCCTGGAGGTTCTGAGCAAGGAAGTTCTGTTAGACATATTCCCTGTGCTGAAG
Seq C2 exon
ATTTTCCCCAGCAAAGCCATGGAAAAGATGAAGGGTTGTGTTCAAATGCGAAATGAATTGCTGAATGAAATCCTTGAAAAATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014335-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
PF0006717=p450=FE(16.3=100)
C2:
PF0006717=p450=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGTCAGACAACCAAAAGGG
R:
GACATTTTTCAAGGATTTCATTCAGC
Band lengths:
212-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]