DreEX6061643 @ danRer10
Exon Skipping
Gene
ENSDARG00000033566 | cyp17a1
Description
cytochrome P450, family 17, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040213-2]
Coordinates
chr13:28476307-28479059:-
Coord C1 exon
chr13:28478921-28479059
Coord A exon
chr13:28476761-28476990
Coord C2 exon
chr13:28476307-28476393
Length
230 bp
Sequences
Splice sites
3' ss Seq
CTAATTCTTTCTCTGCAAAGTTT
3' ss Score
5.18
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTACAACAGACTTGTTAACTCGAGATGGGAAAGATATAGCGTTTGCTGACTACAGTTCCACATGGAAGTTTCACCGCAAAATGGTTCATGGAGCTCTTTGCATGTTTGGAGAAGGTTCAGTTTCTATTGAGAAGATAA
Seq A exon
TTTGCAGGGAGGCGAGCTCTATGTGTGAAGTGTTGACTGAAAGCCAAAACAGTGCTGTGGATCTGGGACCGGAGTTGACACGCGCTGTCACAAATGTGGTGTGTGCCTTGTGTTTTAACTCCTCGTATAAACGTGGAGATGCTGAGTTTGAGTCCATGCTCCAGTACAGCCAGGGAATCGTGGATACAGTTGCAAAGGACAGCTTGGTGGATATTTTCCCATGGCTGCAG
Seq C2 exon
ATTTTCCCAAATAAAGACCTCAGAATCCTAAGACAATGCATTTCCATCAGAGATAAACTGCTTCAGAAGAAATATGAGGAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033566-'2-3,'2-1,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
PF0006717=p450=FE(16.4=100)
C2:
PF0006717=p450=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGACTTGTTAACTCGAGATGG
R:
TGTGTTCCTCATATTTCTTCTGAAGC
Band lengths:
220-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]