GgaEX6040825 @ galGal3
Exon Skipping
Gene
ENSGALG00000008121 | F1NYI7_CHICK
Description
NA
Coordinates
chr6:24819344-24820056:-
Coord C1 exon
chr6:24819918-24820056
Coord A exon
chr6:24819540-24819769
Coord C2 exon
chr6:24819344-24819430
Length
230 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCCTTCCACCCAAAGTCT
3' ss Score
7.1
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGACCACGGACCTACTGTCCCGCGGGGGAAAGGACATCGCCTTTGCCAGCTACGGTCCCCTCTGGAAGTTCCAGCGCAAACTGGTGCATGCTGCCCTCTCCATGTTTGGGGAGGGCTCAGTCGCCCTGGAGAAGATCA
Seq A exon
TCTGCCGGGAGGCCGCATCCCTGTGTGAGACGCTGGGTGCTGCGCAGGATATGGCCCTAGACATGGCCCCGGAGCTCACACGGGCCGTCACCAATGTGGTCTGCTCCCTCTGCTTCAACTCCTCCTACCGACGCGGGGACCCCGAGTTCGAGGCCATGCTGGAGTACAGCCAGGGCATTGTGGACACCGTGGCCAAGGAGAGCCTGGTGGACATCTTCCCCTGGCTACAG
Seq C2 exon
ATCTTCCCCAACAGGGACTTGGCTCTGCTGAAGCGATGCCTGAAGGTCAGGGACCAGCTGCTCCAGCAGAAGTTCACTGAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.9=100)
A:
PF0006717=p450=FE(16.4=100)
C2:
PF0006717=p450=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACGGACCTACTGTC
R:
TTCAGTGAACTTCTGCTGGAGC
Band lengths:
220-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]