BtaEX6100901 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019322 | HABP2
Description
Bos taurus hyaluronan binding protein 2 (HABP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001014868]
Coordinates
chr26:34319208-34327130:+
Coord C1 exon
chr26:34319208-34319244
Coord A exon
chr26:34325448-34325558
Coord C2 exon
chr26:34327023-34327130
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTCCCATGTCTGTAGATT
3' ss Score
8.67
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
CTCTCCCTGCTGTCTTTTCTCACAGAGCCGGACCCAG
Seq A exon
ATTGGACTCCTGACCAGTATGAGTACAGCCAAGAGTATAATAACCAGGAAGAGAACGCCAGCAGTACCACTGCCTATTCTGACAACCCTGACTGGTACTACGAAGAGGATG
Seq C2 exon
ACCCATGCCTGTCCAACCCCTGTACACATGGTGGGGACTGCCTCGTCAGTGGGGCCACCTTCACGTGCCGCTGTCCGGACCCTTTCTCTGGAAACAGGTGTCAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019322-'3-3,'3-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.421 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=83.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCCTGCTGTCTTTTCTCAC
R:
ACACCTGTTTCCAGAGAAAGGG
Band lengths:
138-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]