GgaEX1027972 @ galGal4
Exon Skipping
Gene
ENSGALG00000008905 | HABP2
Description
hyaluronan-binding protein 2 preproprotein [Source:RefSeq peptide;Acc:NP_001264308]
Coordinates
chr6:26978373-26983018:+
Coord C1 exon
chr6:26978373-26978406
Coord A exon
chr6:26981903-26982037
Coord C2 exon
chr6:26982908-26983018
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGCATTTCCTTCCCCTACAGATG
3' ss Score
11.61
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
Exon sequences
Seq C1 exon
CCTTCCTGGTCCTCCCTGGCCAACCTGGTGAATG
Seq A exon
ATGAGGCTGATGACTATGAGTACGAGTACTATGATGAATACGTGCAAGTGGAAGAGAAACTATCCCAAGAGATTCTGCTCTTGGGGGAACCTGACTGGGTCGACCCATCCCCTCTCTACAGAAGAATCCAGCAAG
Seq C2 exon
AAGATCTGTGCTCCTCCAACCCCTGCAAGAACAACGGCTGGTGTGAGATGAGAGGAAGCAATTTCACCTGCCTCTGCCCCAGGCCCTATACCGGGGACACCTGTGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008905-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=81.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCCTCCCTGGCCAA
R:
CTTCCCCACAGGTGTCCCC
Band lengths:
140-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]