MmuEX0022325 @ mm9
Exon Skipping
Gene
ENSMUSG00000025075 | Habp2
Description
hyaluronic acid binding protein 2 [Source:MGI Symbol;Acc:MGI:1196378]
Coordinates
chr19:56372505-56383434:+
Coord C1 exon
chr19:56372505-56372541
Coord A exon
chr19:56381263-56381373
Coord C2 exon
chr19:56383327-56383434
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTCCTGCCCCTGCAGATT
3' ss Score
11.05
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
CTCTCACTGATGTCCTTCATTGCGCCCCCAGACCCAG
Seq A exon
ATTGGACCCCCGATGACTATTACTACAGCTATGAGCAGTCCAGCCCAGACGAAGACCCCAGTGTCACGCAGACCACCCCTGAGAACCCCGACTGGTACTATGAAGACGATG
Seq C2 exon
ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGGATACCTTCAGTTGCAGCTGCCCAGCCCCCTTCTCGGGGAGCCGGTGCCAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025075_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.526 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=83.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGTCCTTCATTGCGCC
R:
CAGTCTGGCACCGGCTCC
Band lengths:
140-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: