RnoEX0040785 @ rn6
Exon Skipping
Gene
ENSRNOG00000016659 | Habp2
Description
hyaluronan binding protein 2 [Source:RGD Symbol;Acc:1302979]
Coordinates
chr1:277080037-277093229:+
Coord C1 exon
chr1:277080037-277080073
Coord A exon
chr1:277091025-277091135
Coord C2 exon
chr1:277093122-277093229
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTCCTGCCCCTGCAGATT
3' ss Score
11.05
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
CTCTCACTGATGCCATTCATTGCACCTCCAGACCCAG
Seq A exon
ATTGGACCCCCGATGACTATTACTACAGTTACGAGCAGTCCAGTCCAGACAAAGACGCCAGTGTCACGCAGACCTCCCCCGAGAACCCCGACTGGTACTATGAAGACGATG
Seq C2 exon
ATCCATGCCAGTCCAACCCCTGTGAACACGGCGGGGACTGTATCATCAGAGGGAATACCTTCAGTTGCAGCTGCCCGGCCCCCTTCTCGGGGAGCCGGTGTCAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016659_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.395 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0000822=EGF=WD(100=83.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGCCATTCATTGCACCT
R:
GTCTGACACCGGCTCCCC
Band lengths:
138-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]