BtaEX6100928 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34349276-34357538:-
Coord C1 exon
chr26:34357431-34357538
Coord A exon
chr26:34356252-34356563
Coord C2 exon
chr26:34349276-34349380
Length
312 bp
Sequences
Splice sites
3' ss Seq
CCGCCTGGTTCTCCTTCCAGTTT
3' ss Score
9.35
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCAAAATACAAGGAGTCTTGGAGGAATCTCCATGCTCAAGGCTACAAGCTAACAATAGATGCTCTGCCCTTCCAGGCGGCTCGAGTCTCTGGAGACATAGCCAGTGAT
Seq A exon
TTTCTCTACAGACATGACTTTGTGAAGGAGCGAGGACGGCTGATCGGGGCCCAGAGCGTGAGTGACGACCCCCGGCTCCAGCACTGTCAGCGGGTGGGCCAGCTGCAGAGCGAGCTTCAGTACAGGAGGCAGGCGGCAGGCAGCAGAGCGCAGTGCCACCTGCCCATGGACATGGTGCCACTGGTCCATGCCCGGAAGGCCCAGGCCCTGGCCAGCGACCTTGACTACAGGACACAGTGCCACGCGTTCACAGCGCTGCCCGAGGACCTGAGGATGGCCTGGGCCAAGAAGGCCCATGCCCTGCAGAGTGAG
Seq C2 exon
CTGCGCTACAAGTCGGACCTGATGGGCATGAAGGGGACAGGATGGCTGGCGCTGAGTTCCCCACAGATAGAAAGTGCAAAGAAGGCCGGAGAACTCATCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327-'41-41,'41-40,43-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.143
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(34.6=25.0),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.0),PF0088013=Nebulin=WD(100=22.1)
C2:
PF0088013=Nebulin=PU(55.6=42.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAGTCTTGGAGGAATCTC
R:
TGATGAGTTCTCCGGCCTTCT
Band lengths:
200-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]