RnoEX0060898 @ rn6
Exon Skipping
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277113472-277121193:-
Coord C1 exon
chr1:277121086-277121193
Coord A exon
chr1:277119918-277120229
Coord C2 exon
chr1:277113472-277113576
Length
312 bp
Sequences
Splice sites
3' ss Seq
AAGTTGGCCGTCCCTTCCAGTTT
3' ss Score
5.03
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
GCAAAATACAAGGAGTCTTGGCATAATCTTCGTGCTCAAGGCTACAAGCTAACGATAGACGCCCTCCCTTTCCAGGCTGCGCGGGCCTCTGGAGACATAGCCAGTGAC
Seq A exon
TTTCTCTACAGGCACGAGTTTGTGAAGGAGCGCGGGCAGCTCATTGGGGTGCGGAGTGTGAGTGACGACCCACGGCTGCGGCACTGCCAACGGATGGGCCAGCTGCAGAGTGAGAATTGGTACAGGAAGGAGGCGGCCAGCAGCCAAGCTCAGTACCACCTGCCCATGGATATGGTGCCCCTGGTCCATGCCAGGAAGGCCCAGGCCCTGGCTAGTGACCACGACTACCGGACACAGTGCCATGAGTTCACCGCGCTGCCTGAGGATCTGAAGATGGCCTGGGCCAAGAAAGCGCATGCCCTGCAGAGTGAG
Seq C2 exon
TTTCGCTATAAAGCGGACTTGATGGGCATGAAAGGAAGTGGATGGCTGGCTCTGCAATCTCCACAGATAGAGAGTGCAAAGAAGGCTGGAGAGCTCATCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714-'40-46,'40-43,41-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.200
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=WD(100=22.1)
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTTGGCATAATCTTCGTGCT
R:
CTCACTGATGAGCTCTCCAGC
Band lengths:
200-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]