MmuEX6033785 @ mm10
Exon Skipping
Gene
ENSMUSG00000049134 | Nrap
Description
nebulin-related anchoring protein [Source:MGI Symbol;Acc:MGI:1098765]
Coordinates
chr19:56328996-56336150:-
Coord C1 exon
chr19:56336043-56336150
Coord A exon
chr19:56335026-56335337
Coord C2 exon
chr19:56328996-56329100
Length
312 bp
Sequences
Splice sites
3' ss Seq
CAGCCGGCCGGCCCTTCCAGTTT
3' ss Score
3.47
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCAAAATACAAGGAGGCTTGGCATAATCTTCGTGCTCAAGGCTACAAGCTGACGATAGACGCCCTCCCCTTCCAGGCTGCTCGGGCCTCTGGAGACATAGCCAGTGAC
Seq A exon
TTTCTCTACAGGCACGAGTTTGTGAAGGAGCGTGGACAGCTCATTGGGGTGCGGAATGTGAGTGACGACCCGCGGCTACTGCACTGCCTACGGATGGGCCAGCTGCAGAGTGAGAATCAGTACAGGAAGGAGGCGGCCAGCAGCCAAGCTCAGTGCCACCTGCCCATGGATATGATGTACCTGGTCCATGCCAGGAAGGCCCAGGCCCTGGCCAGTGACCACGACTACCGGACACAGTGCCACGAGTTCACCGCCCTGCCTGAGGATCTGAAGATGGCCTGGGCCAAGAAAGCGCACGCCCTGCAGAGTGAG
Seq C2 exon
TTTCGCTACAAGGCGGACTTGATGGGCATGAAAGGGACAGGATGGCTGGCTCTGCAGTCTCCTCAGATAGAGAGTGCAAAGAAGGCTGGAGACCTAATCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049134-'40-42,'40-41,41-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.046 C2=0.081
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(39.3=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=26.9),PF0088013=Nebulin=WD(100=22.1)
C2:
PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAAATACAAGGAGGCTTGGC
R:
TCACTGATTAGGTCTCCAGCCT
Band lengths:
212-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types