DreEX6069937 @ danRer10
Exon Skipping
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30494184-30494947:+
Coord C1 exon
chr12:30494184-30494291
Coord A exon
chr12:30494420-30494731
Coord C2 exon
chr12:30494843-30494947
Length
312 bp
Sequences
Splice sites
3' ss Seq
CACTTCCTTTGCCTTGTTAGGTC
3' ss Score
8.78
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTAAGTACAAGGAATCATGGAATGTGCTTCGAGCTCAGGGTTATAAACTCACCATGAAGGATATCCCCTTCCAAGCTGCCAAAGCATCCACCAGCATTGCTAGTGAT
Seq A exon
GTCCAGTACAAGCACAGCCATGCATTAGAGAAGGGCAAGCACATTGGAGTCCGCAGCATTTTGGAGGACTCTCATCTAATGCACTGCCTGGAGATGGGCCGTCTGCAGAGCGACCAGCATTATCGTAAAGACGCCATGTGCACCAGTGGCCAGTATCAGCTGCCTTTAGACATGGTGAACCTGGTTCATGCCAAGAAAGCCCAGGCCTTAGCCAGCGATCAGGATTACAAGACTCAAATTCATTCTTACACAGTCCTGCCTGACGATATAAAGGTGCAGTGGGCCAAAAAGGCATATGAGCTGCAGAGCCAG
Seq C2 exon
AATGTATACAAATCAGATCTGAACTTCATGAAAGGAGTGGCCTGGGATTCAGTCGGCGCACCTCAGCTAGAGTCTGCAAAGAAAGCTGGAGAGCTCATAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341-'36-40,'36-39,37-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.143
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=22.1),PF0088013=Nebulin=PU(55.2=15.4)
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAAGGAATCATGGAATGTGCT
R:
GCTCTCCAGCTTTCTTTGCAGA
Band lengths:
198-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]