BtaEX6100973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35040436-35046055:+
Coord C1 exon
chr26:35040436-35041008
Coord A exon
chr26:35044751-35045302
Coord C2 exon
chr26:35045930-35046055
Length
552 bp
Sequences
Splice sites
3' ss Seq
CCGCTTTGCTTATTCTACAGGCT
3' ss Score
7.87
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGGCTTCCAGCGGGCCAAGGCCTTCGTGAAGCGGTTTGTGCGGGCAGCGCTGACCCGAGACTCCCAAGCGCGCGTGGGTGTGGCCCTCTACGGCGCGAAGCTGACCGTGGCCGTGCCAGTGGGCGAGTATCAGGATGTGCCAGACCTGATTTGGAGCCTCGACGGCCTGCCCTTCGACGGTGGCGCCACTCTGACGGGCCGGGCCCTACGGCAGGTGGCAGAGCGCGGCTTCGGGAGTGCCCCCAGGACAGGCCTGGACCAGCCTCGACGGGCGGTGGTCCTGATGACCGAGGCGCGCTCCCAGGATGAGGTGGCCGGCCCGGCGGGCTTCGCGAGGGCCCGGCAGCTGCTCCTGCTGGGTGTGGGCAGCGAGGACGTGCGGGCGGAACTGGAGATGATCACTGGCGGCCCGGAGCGCGTGCTGACCTACACCAGCCCACAGGACCTATTCGACCAAATCCCAAAACTTCAGGGCAAACTGTGCAGCCGGCCACGCCCAG
Seq A exon
GCTGCCAGGCCCAGTCGCTGGACCTGGTCTTCATGCTGGACGCCTCGGTCTCAGTGGGGCCCGAGAACTTCGCCCAGATGCAGAGCTTCGTGAGAAGCTGTGTCCTCCGGTTTGACGTGAACCCCGATGTGACGCAGATCGGTCTGGTGGTGTACGGCAGCCGTGTCCAGACAGCCTTCGGGCTGGACACCCACCTCAGCCGTGCTGCAGTGCTGCGGGCCCTGAGCCAGGCCCCCTACCTGGGAGGGGTGGGCTCAGCAGGCACGGCCTTGCTGCACATCTATGACAAGGTGATGACGGTCCAGGGCGGTGCCCGGCCTGGCGTCCCCAAGGCGGTGGTGGTGGTCACGGGTGGGAGCGGGGTGGAGGACGCGGCTGTCCCGGCCCAGAAGCTGAGGGACAACGGCGTCTCGGTCTTGGTGGTGGGTGTGGGGCCCGTCCTGAGGGAGGCACTGTGGAGGCTTGCGGGTCCCCGTGACGCCCTGATCCACGCAGCAGCCTATGCAGACCTGAGTCACCACCAGGATGCACTCATCGAGTGGATATGCAGAG
Seq C2 exon
AAGCCAAGCGGCCAGTTAACCTCTGCAAACCCAGCCCATGCATGAACGAGGGCATCTGTGTCCTGCGCAACGGGAGCTACCGCTGCGAGTGCCAGGGTGGCTGGGAGGGCCCCCACTGCGAGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=89.1)
A:
PF0009223=VWA=WD(100=93.5)
C2:
PF0000822=EGF=WD(100=72.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCTTCGACGGTGG
R:
GAGGTTAACTGGCCGCTTGG
Band lengths:
358-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]