DreEX6069853 @ danRer10
Exon Skipping
Gene
ENSDARG00000075441 | vwa2
Description
von Willebrand factor A domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100302-1]
Coordinates
chr12:30199480-30202607:-
Coord C1 exon
chr12:30202029-30202607
Coord A exon
chr12:30199672-30200223
Coord C2 exon
chr12:30199480-30199602
Length
552 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTTTGTTTCTGTTAGGTT
3' ss Score
10.69
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTTGCGATTCAAGTCCTTCCTGAAGCGTTTCATGCAGGCCGTATTGAGCTCTGACACTCCTGTAAAAATGGGGTTGGCCCAGTATGGCAGCGACGTGAAGATCGAGGCCAGAATTGGGGAGCACAGAGACCCGGTGAAGCTGATCCAGGCTGTTGAGGGACTTCAGTATCGTGGTGGGCAGACGAAAACCGGAAATGCCCTTCGCTACATCACACGCCACGGCTTCCAGAGCACGCCTGTGTTCGCTGACGTTCAGGACGACCTGCCGCGGGTGGTAGTTCTGCTCACCGGGACGCCCTCAGCAGATCATGTGGTGGAGCCAGCGAAGTACGCACGGGACAGGGAGATCTTCATCATCGGTGTAGCGCCAGAAGGCATGAGGGCTGAGATAAACAACATCACAGGGAACCCTCAGCGCACCATCATGTACCAGTCACCGGATAGATTGAGCAGCAAGATCCCAGAACTAAGAGCCAAAATCTGCAGCGTCGACAACCAGG
Seq A exon
GTTGTCTGGGTCAGGCTCTGGACCTTGTGTTTGTTCTGGATGCCTCCAGTGGTGTCGGCAAGGAGAATTTCATTCACTTTCAGGATTTTGTTCGGAGCACTTCAGTGCAGTTTGACATTAATCGAGATGTGGCTCAGGTGGGATTGGTGGTTTATGGGAGGCGTCCAGTCACGGTCTTTGACTTGGACAAGTACAATTCGGGCTCCGCTGTGCTGAGGGCTGTGGGGGACGCCGCTTTTCTGGGTGGGAAGGCTTCTGTAGGTTCAGCCCTGCTCCATGTGCTCTCCCAAAGCCTGACGGTGGGGAAGGGAGCACGTCCTGGAGTCAACAAGGCTGTGGTGGTGCTGACTGATGGGACGGGTGTGGAGGACGCTGCGGTGCCTGCACAGAAGATCCGTGATAGCGGAGTGTCCATATTCTTAATTGGAGTTGGGGACATCCAGCAGGAGCTTCTTCTCCGCATCTCTGGCTCTGAGGATCACATGATCACCGTGCCTTCATACGATGACCTAAAATACTCAGAGGATGTGCTGGTACAGATGGTGTGTTCAG
Seq C2 exon
ATGTGAAGAAGCCTGTAAACCTTTGCAGTCCAAACCCCTGTATGAATGATGGCATCTGTGTGATGCTGAATGGGAGTTACCGCTGCGAATGCCGTGGCTGGAAGGGTCCACACTGCGAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075441-'12-13,'12-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.052 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=89.2)
A:
PF0009223=VWA=WD(100=94.1)
C2:
PF0000822=EGF=WD(100=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAATGCCCTTCGCTACAT
R:
ACAGGGGTTTGGACTGCAAAG
Band lengths:
352-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]